Sara Ballouz

Latest

Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events
Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses
Analytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes
CoCoCoNet: conserved and comparative co-expression across a diverse set of species
Single-cell Transcriptomics
Is it time to change the reference genome?
Predictability of human differential gene expression
The fractured landscape of RNA-seq alignment: the default in our STARs
Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor
EGAD: ultra-fast functional analysis of gene networks
Strength of functional signature correlates with effect size in autism
Using predictive specificity to determine when gene set analysis is biologically meaningful
Exploiting single-cell expression to characterize co-expression replicability
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression
Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction
Positive and negative forms of replicability in gene network analysis
Guidance for RNA-seq co-expression network construction and analysis: safety in numbers
Measuring the wisdom of the crowds in network-based gene function inference
Novel therapeutics for coronary artery disease from genome-wide association study data
Bias tradeoffs in the creation and analysis of protein-protein interaction networks
Candidate disease gene prediction using Gentrepid: application to a genome-wide association study on coronary artery disease
Identification of novel therapeutics for complex diseases from genome-wide association data
Gentrepid V2.0: a web server for candidate disease gene prediction
Analysis of genome-wide association study data using the protein knowledge base
Web tools for the prioritization of candidate disease genes
Conditions for the evolution of gene clusters in bacterial genomes
Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies
Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events