Jesse Gillis

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Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events
Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses
Analytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes
CoCoCoNet: conserved and comparative co-expression across a diverse set of species
Predictability of human differential gene expression
The fractured landscape of RNA-seq alignment: the default in our STARs
Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor
EGAD: ultra-fast functional analysis of gene networks
Strength of functional signature correlates with effect size in autism
Using predictive specificity to determine when gene set analysis is biologically meaningful
Exploiting single-cell expression to characterize co-expression replicability
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression
Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction
Positive and negative forms of replicability in gene network analysis
Guidance for RNA-seq co-expression network construction and analysis: safety in numbers
Measuring the wisdom of the crowds in network-based gene function inference
Bias tradeoffs in the creation and analysis of protein-protein interaction networks